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Added 8 mins ago
Mechanical Engineer II (Product Improvement Engineering)
Life Fitness, LLC
Ramsey, MN
Are you a Mechanical Engineer, passionate about fitness, and looking to gain hands-on experience and grow your skills? Life Fitness / Hammer Strength is looking for a Mechanical Engineer II…
Added 9 mins ago
GA
Director, Architecture and Data
GE Aerospace
Minnetonka, MN
- $152,000 to $202,000 USD / year
…reusable patterns, and one governed route from idea to authorized…
Added 9 mins ago
CM
Quality Engineer II
Cirtec Medical Corporation
Brooklyn Park, MN
- $80,000 to $95,000 USD / year
Provide Quality Project Management Support as needed for product transfers from validation to production.
Added 14 mins ago
SI
Forward Deployed Engineer Specialists (FDE) (Mid/Senior Level)
Salesforce, Inc.
NY
- $148,500 to $285,800 USD / year
Production experience required. Builder mindset non-negotiable.
Added 22 mins ago
Senior API & Integration Engineer
Vast Bank
Remote, United States
Vast Bank is looking to hire an Senior API & Integration Engineer!
Added 31 mins ago
OT Security Engineer
CGI
Pittsburgh, PA
CGI is looking for operational Technology (OT) security engineer for a fulltime position in New Orleans.
Added 33 mins ago
Sr Engineering Manager
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Tempe, AZ
Managing the specific final product test engineering functional area, including both engineering development and ongoing production support.
Added 46 mins ago
Senior Infrastructure Engineer
Mach Industries
Huntington Beach, CA
…new systems, network, and cloud capabilities from design to production, using automation and reusable patterns to make each build easier to deliver and…
Added 46 mins ago
Infrastructure Engineer
Mach Industries
Huntington Beach, CA
Operate and improve production infrastructure that supports engineering and business teams. Apply established systems, network, or cloud patterns, automate recurring work, and keep services…
Added 57 mins ago
Design Engineer
Panasonic
Suwanee, GA
As a key member of the project design team, our Mechanical Design Engineer applies engineering best practices to develop and document the complete mechanical design for our projects. The…
Added 57 mins ago
Quality Engineering Technician I (Day shift)
Panasonic
Sparks, NV
Provides support with establishing quality control systems in the battery production process.
Added 59 mins ago
CI
Staff Software Engineer, Agentic Tools
Cribl, Inc
Denver, CO
- $210,000 to $245,000 USD / year
…focus on intent engineering, orchestration and harnesses, and production agent infrastructure that other teams can trust and…
Added 1 hour ago
Process Engineer 5
Lam Research
Tualatin
The Customer Support Business Group focuses on enabling our customers with premier customer support throughout their lifecycle with Lam. We drive performance, productivity, safety, and…
Added 1 hour ago
Cloud Engineer SME
Ignite IT
Remote, United States
We are seeking a highly skilled Cloud Engineer Subject Matter Expert (SME) to join our team. The Senior Cloud Engineer (Cloud Engineer SME) is the senior technical implementation lead…
Added 1 hour ago
Senior Network Security Engineer
Ignite IT
Remote, United States
We are seeking a Senior Network Security Engineer for an operations-first role supporting enterprise network security infrastructure across on-premises, remote-access, hybrid-cloud, and…
Added 1 hour ago
Senior AI/ML Engineer
Ignite IT
Remote, United States
Ignite IT Hub is seeking a senior AI/ML Engineer to maintain and enhance the U.S. Census Bureau's LLM Autocoder, which assigns standardized codes to survey write-in responses. You will…
Added 1 hour ago
Senior USPS Android Mobility & UEM Integration SME
Ignite IT
Remote, United States
Engineer and support application distribution using USPS SOTI UEM and/or Government Agency Microsoft Intune, as applicable to the approved integration architecture.
Added 1 hour ago
Senior Identity Engineer
Ignite IT
Remote, United States
Ignite IT is seeking an experienced Senior Identity and Access Management (IAM) Engineer to support enterprise identity and directory services for the U.S. Census Bureau.
Added 1 hour ago
Full Stack Developer (Python / Java / Angular / AWS)
Ignite IT
Remote, United States
Ignite IT is seeking a Senior Full Stack Developer to support the U.S. Customs and Border Protection (CBP) in developing and modernizing enterprise applications that improve operational…
Added 1 hour ago
Lead Cloud Engineer (Security / SRE)
Ignite IT
Remote, United States
Ignite IT is seeking a Lead Cloud Engineer (Security / SRE) to support the U.S. Census Bureau as it modernizes its enterprise IT environment ahead of the 2030 Decennial Census. This is a…
Added 1 hour ago
CA
Agent Strategist
Conduit AI
San Francisco, CA
- $135,000 to $220,000 USD / year
Some of our customers are property managers without a tech team, and they hand us their guest support and operations to run for them. Our agents do the work. A remote team of virtual…
Added 1 hour ago
Developer Advocate - AI & Developer Experiences
Snowflake Inc.
Bellevue, WA
Contribute reusable patterns, templates, and playbooks that help builders move from first use to production.
Added 1 hour ago
Engineer - Automation Engineering – Biologics- Lilly Medicine Foundry
Lilly
Lebanon, IN
The Engineer - Automation Engineering will work as a member of the Automation Engineering Department at Eli Lilly, Foundry. The engineer will provide automation support for one or more…
Added 1 hour ago
Staff Mechanical Engineer - Engine Assembly (On-site Engineering Lead)
GE Aerospace
Lafayette, IN
Manufacturing or production support experience - you've been on a floor, not just in a CAD seat.
Added 1 hour ago
Continuous Improvement & Quality Assurance Manager (Michigan City, Indiana (IN), US, 46360)
SPX
Michigan City, IN
…we Reach, Identify, Strengthen, and Engage our employees to support them in their continued development. We're a global company with problem solvers, collaborators, and innovators, and our…

Baylor Genetics

Senior Bioinformatics Software Engineer

Remote, United States

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Job details

Posting language: English
Posted: Nov 6, 2026

Original job description

JOB SUMMARY

The Senior Bioinformatics (BI) Software Engineer holds a critical technical role, responsible for designing, developing, and maintaining scalable and efficient software solutions for Baylor Genetics’ bioinformatic pipelines. This role involves collaborating with and supporting cross-functional teams to deliver data-driven software solutions aligning with business needs.

KEY RESPONSIBILITIES

BI Development:Design, develop, and maintain robust software solutions using various tools, databases, and technologies to meet business requirements.
Data Modeling:Create and optimize data models, ensuring the accuracy, integrity, and performance of the underling computational algorithms, especially as pertains to assembly, mapping, variant calling and variant annotation.
ETL Processes:Develop and optimize ETL (Extract, Transform, Load) processes to efficiently extract data from various sources, transform it, and load it into the BI system, with an emphasis on utilizing APIs
Query Optimization:Analyze and optimize SQL queries and database performance to enhance data retrieval and reporting speed. Contribute to schema design and review sessions to ensure high performance and maintainable databases.
Dashboard & Report Creation:Develop interactive dashboards and automated reports using BI tools (e.g., Azure Pipelines, Teams Power Automate, email, Nextflow) to provide actionable insights for stakeholders.
Collaboration:Work and align closely with stakeholders, including data analysts, business users, clinical reviewers, laboratory personnel and software developers, to scope their requirements and deliver timely integrations of new software.
Data Integration:Integrate disparate data sources and ensure consistency, accuracy, and reliability of data across the BI system, with a focus on devising systems that have minimal to no code debt and are highly maintainable and flexible.
Quality Assurance:Conduct rigorous testing of BI solutions to ensure data accuracy, system stability, and optimal performance, with the ability to automate testing suites using packages (e.g. pytest, doctest, Azure Pipelines)
Documentation & Maintenance:Create comprehensive documentation for developed solutions and provide support and maintenance as necessary. This generally includes: (1) detailed in-line commenting noting Jira ticket request numbers, genomic diagrams, reasoning and personal thoughts, TODO comments, docstrings, BG headers, etc.; (2) wikis and README files instructing users on how to install and implement the software along with trace mappings detailing how the software is generally organized.

QUALIFICATIONS

Required

Education:Bachelor’s degree in Computer Science, Software Engineering, Bioinformatics or a related field; Master’s degree preferred.
Experience:Minimum of 5 years of experience in software development, with a proven track record of designing and implementing scalable software solutions based on diverse user feature needs. Must have a proven track record of implementing production ready software solutions from scratch. Prior experience or domain knowledge from collaborating with laboratory scientists, computational biologists, or clinical reviewers is a nice-to-have.

COMPETENCIES

Technical Skills:

Deep knowledge and expertise in at least two programming languages (Python, Perl, R, or Bash, will also consider Java, C++, and Groovy).
Proficient in a range of database technologies, including SQL Server, NoSQL, MongoDB, MySQL, and ElasticSearch, demonstrating comprehensive skills in database management, optimization, and query development.
Proficiency in working in an Agile framework and implementing CI/CD practices using Git. Knowledge of Azure is a bonus.Implementation of object orientated programming (OOP) is second nature, which includes building intuitive classes relevant to the science, system, or service.
Standard software design practices relevant to that language is intuitive to you. Demonstrated ability to build entire software packages from scratch that are performant and highly maintainable, ensuring they are tested and are production ready. Solid understanding and habitual practice of unit and integration testing of software.
High regard for documentation and object/variable naming that is explicit, with the ability to relay or distill scientific concepts within supplemental documentation or inline code itself.
Proficiency in designing and building APIs and microservices from scratch.
Familiarity with Linux OS and HPC clusters (SLURM, Kubernetes, GCP, Azure, etc.) is a plus, but not essential.
Solid understanding of package management practices (PIP, Conda, etc.) and containerization (Docker, Singularity, etc.).
Proficiency or knowledge of workflow management or orchestration tools (Nextflow, Airflow, Snakemake, etc.) is a plus, but not essential.

Analytical Thinking: Strong analytical and problem-solving skills with the ability to translate complex business needs into technical solutions and work independently to solve problems. Also requires good communication skills and flexibility to reach out to stakeholders and SMEs as necessary

Team Collaboration:Excellent interpersonal and communication skills to collaborate effectively with multidisciplinary teams. Should be open and willing to receive and give criticism and feedback in a measured manner, focused on solving the problem at hand.
Adaptability:Ability to adapt to evolving technologies, learn new tools, and implement best practices in BI software engineering and development. Should be able to assess situations when a drop-in solution would be preferable to a custom software implementation and run proof-of-concepts as needed. Should be highly familiar with best practices in software development and an advocate of best practices, even under pressure.
Project Management:Experience in managing individual projects and adhering to timelines while delivering high-quality solutions, ensuring good communication in situations where project scopes may fluctuate
Performs other advanced job-related duties as assigned.

PHYSICAL DEMANDS AND WORK ENVIRONMENT

Frequently required to sit.
Frequently required to stand.
Frequently required to utilize hand and finger dexterity.
Frequently required to talk or hear.

EEO STATEMENT

Baylor Genetics is proud to be an equal opportunity employer dedicated to building an inclusive and diverse workforce. We do not discriminate based on race, religion, color, national origin, sex, sexual orientation, age, gender identity, veteran status, disability, genetic information, pregnancy, childbirth, or related medical conditions, or any other status protected under applicable federal, state, or local law.

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More about this job

Skills

Data modelling
Data models
Assembly
Data engineering
SQL
Reporting
Microsoft Azure
Microsoft Teams
Microsoft Power Automate
Collaboration
Quality assurance
Documentation
Jira
Computer science
Software development
Programming languages
Python
Perl
R
Bash
Oracle Java
C++
Apache Groovy
Microsoft SQL Server
NoSQL
MongoDB
MySQL
Elasticsearch
Agile
CI/CD
Git
Microservices
Linux
Kubernetes
Google Cloud
Docker
Workflow
Apache Airflow
Snakemake
Analytical skills

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